Applet     < 4 of 6 >

The Jmol applet window will load the 3D structure of the pocket which can be manipulated and controlled by the user with several representations and color schemes.

1. The Jmol applet is java based and you will need java suite to view the 3D view. Use your left mouse button to drag the 3D structure, the middle button to zoom and the right button to open more options.	2. You can view your pocket in stereo view using "red and blue" 3D goggles.
3. As in the 2D view you can color the residues by several color schemes as well as coloring the atoms by atom type.	4. You can switch between different representation of you protein, ligand and pocket structure.